Simple sequence repeats in the Helicobacter pylori genome.

Journal article

We describe an integrated system for the analysis of DNA sequence motifs within complete bacterial genome sequences. This system is based around ACeDB, a genome database with an integrated graphical user interface; we identify and display motifs in the context of genetic, sequence and bibliographic data. Tomb et aL (1997) previously reported the identification of contingency genes in Helicobacter pylori through their association with homopolymeric tracts and dinucleotide repeats. With this as...

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Authors: Saunders, N; Peden, J; Hood, D; Moxon, E

• Publication status: Published
• Journal: Molecular microbiology
• Volume: 27
• Issue: 6
• Pages: 1091-1098
• Publication date: 1998-03-01
• DOI: 10.1046/j.1365-2958.1998.00768.x
• EISSN: 1365-2958
• ISSN: 0950-382X
• Language: English
• Keywords: Fucosyltransferases; Base Sequence; Repetitive Sequences, Nucleic Acid; DNA Restriction-Modification Enzymes; Sequence Analysis, DNA; Open Reading Frames; Helicobacter pylori; Molecular Sequence Data; Databases, Factual; Lipopolysaccharides; Membrane Proteins; Genome, Bacterial; Software; Dinucleotide Repeats