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BlastAlign: a program that uses blast to align problematic nucleotide sequences.

Abstract:

UNLABELLED: BlastAlign uses NCBI blastn to build a multiple nucleotide alignment and is intended for use with sequences that have large indels or are otherwise difficult to align globally. The program builds a matrix representing regions of homology along the sequences, from which it selects the 'most representative' sequence and then extracts the blastn query-anchored multiple alignment for this sequence. The matrix is printed and allows subgroups to be identified visually and an option all...

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Publication status:
Published

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Institution:
University of Oxford
Department:
Oxford, MPLS, Zoology
Role:
Author
Journal:
Bioinformatics (Oxford, England)
Volume:
21
Issue:
1
Pages:
122-123
Publication date:
2005-01-05
DOI:
EISSN:
1367-4811
ISSN:
1367-4803
URN:
uuid:ed0151f0-2c65-4f35-8065-27043344065b
Source identifiers:
209833
Local pid:
pubs:209833

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