- Abstract:
-
UNLABELLED: BlastAlign uses NCBI blastn to build a multiple nucleotide alignment and is intended for use with sequences that have large indels or are otherwise difficult to align globally. The program builds a matrix representing regions of homology along the sequences, from which it selects the 'most representative' sequence and then extracts the blastn query-anchored multiple alignment for this sequence. The matrix is printed and allows subgroups to be identified visually and an option all...
Expand abstract - Publication status:
- Published
- Publisher copy:
- 10.1093/bioinformatics/bth459
-
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- Journal:
- Bioinformatics (Oxford, England)
- Volume:
- 21
- Issue:
- 1
- Pages:
- 122-123
- Publication date:
- 2005-01-05
- DOI:
- EISSN:
-
1367-4811
- ISSN:
-
1367-4803
- URN:
-
uuid:ed0151f0-2c65-4f35-8065-27043344065b
- Source identifiers:
-
209833
- Local pid:
- pubs:209833
- Copyright date:
- 2005
Journal article
BlastAlign: a program that uses blast to align problematic nucleotide sequences.
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