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Assessment of phylogenetic sensitivity for reconstructing HIV-1 epidemiological relationships.

Abstract:

Phylogenetic analysis has been extensively used as a tool for the reconstruction of epidemiological relations for research or for forensic purposes. It was our objective to assess the sensitivity of different phylogenetic methods and various phylogenetic programs to reconstruct epidemiological links among HIV-1 infected patients that is the probability to reveal a true transmission relationship. Multiple datasets (90) were prepared consisting of HIV-1 sequences in protease (PR) and partial re...

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Publication status:
Published

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Authors


Beloukas, A More by this author
Magiorkinis, E More by this author
More by this author
Institution:
University of Oxford
Department:
Oxford, MPLS, Zoology
Zavitsanou, A More by this author
Karamitros, T More by this author
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Journal:
Virus research
Volume:
166
Issue:
1-2
Pages:
54-60
Publication date:
2012-06-05
DOI:
EISSN:
1872-7492
ISSN:
0168-1702
URN:
uuid:ebd24d1d-39e6-4d67-aaba-1aa98fe4a7ba
Source identifiers:
320328
Local pid:
pubs:320328

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