Visualizing the three-dimensional arrangement of hydrogen atoms in organic molecules by coulomb explosion imaging

Journal article

Structure-sensitive methods based on femtosecond light or electron pulses are now making it possible to measure how molecular structures change during light-induced processes. Despite significant progress, high-fidelity imaging of nuclear positions remains a challenge even for relatively small molecular systems and, notably, regarding the positions of hydrogen atoms. As demonstrated in recent work, X-ray-induced Coulomb explosion imaging (CEI) may overcome this obstacle, as its sensitivity does not depend on the mass of the imaged atoms. The photoinduced ring opening of the heterocyclic molecule 2(5H)-thiophenone has attracted recent interest. Here, we show that CEI offers a powerful route to imaging the peripheral H atoms in this molecule and thus, more generally, to tracking detailed nuclear motions (e.g., isomerizations) in organic molecules on ultrafast time scales. Specifically, we record momentum-space Coulomb explosion images that report on the three-dimensional positioning of all nuclei within the molecule, for instance, distinguishing H atoms in C-H bonds that lie within or are directed out of the plane defined by the heavy atoms. The prospect of imaging peripheral H atoms to probe photochemical dynamics is explored by coupling ab initio molecular dynamics with classical Coulomb explosion simulations, thereby differentiating potential photoproduct isomers, including those whose structures primarily differ in the position of the hydrogens.

Authors: Green, AE; Chen, K; Bhattacharyya, S; Allum, F; Usenko, S

• Publication status: Published
• Peer review status: Peer reviewed
• Publisher: American Chemical Society
• Journal: Journal of the American Chemical Society
• Volume: 147
• Issue: 41
• Pages: 37133-37143
• Publication date: 2025-10-01
• Acceptance date: 2025-09-12
• DOI: 10.1021/jacs.5c08730
• EISSN: 1520-5126
• ISSN: 0002-7863
• Language: English
• Keywords: photochemistry; ultrafast imaging; femtosecond; X-ray free-electron laser; Coulomb explosion imaging