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Inference on coat protein evolution of Lily symptomless carlavirus in India and abroad based on motifs study and phylogenetic analysis

Abstract:

Lily symptomless carlavirus (LSV), the most common lily infecting virus around the world, contains 6 open reading frames (ORFs) in its genome, of which ORF5 representing coat protein (CP) is the most variable region and is used here to deduce phylogeny of the virus. CP gene of one of the LSV isolates present in the region, LSV isolate-Oh (Accession no. AJ748277) was taken as test sequence.Multiple sequence alignment of test sequence with ClustalW showed nucleotide and amino acid homology of u...

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Publisher copy:
10.4172/jpb.1000141

Authors


Huddone, S More by this author
Bhardwaj, SV More by this author
Rattan, RS More by this author
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Journal:
Journal of Proteomics and Bioinformatics
Volume:
3
Issue:
6
Pages:
204-211
Publication date:
2010
DOI:
EISSN:
0974-276X
URN:
uuid:e3d78eae-d766-46e8-a546-bde84a60ecad
Source identifiers:
311729
Local pid:
pubs:311729

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