Open-source, Python-based, hardware and software for controlling behavioural neuroscience experiments

Journal article

Laboratory behavioural tasks are an essential research tool. As questions asked of behaviour and brain activity become more sophisticated, the ability to specify and run richly structured tasks becomes more important. An increasing focus on reproducibility also necessitates accurate communication of task logic to other researchers. To these ends, we developed pyControl, a system of open-source hardware and software for controlling behavioural experiments comprising a simple yet flexible Python-based syntax for specifying tasks as extended state machines, hardware modules for building behavioural setups, and a graphical user interface designed for efficiently running high-throughput experiments on many setups in parallel, all with extensive online documentation. These tools make it quicker, easier, and cheaper to implement rich behavioural tasks at scale. As important, pyControl facilitates communication and reproducibility of behavioural experiments through a highly readable task definition syntax and self-documenting features. Here, we outline the system's design and rationale, present validation experiments characterising system performance, and demonstrate example applications in freely moving and head-fixed mouse behaviour.

Authors: Akam, T; Lustig, A; Rowland, JM; Kapanaiah, SK; Esteve-Agraz, J

• Publication status: Published
• Peer review status: Peer reviewed
• Publisher: eLife Sciences Publications
• Journal: eLife
• Volume: 11
• Article number: e67846
• Publication date: 2022-01-19
• Acceptance date: 2022-01-03
• DOI: 10.7554/elife.67846
• EISSN: 2050-084X
• Pmid: 35043782
• Language: English
• Keywords: behaviour; FFR; software; open source; mouse; neuroscience; hardware