Large-scale screening for novel low-affinity extracellular protein interactions.

Journal article

Extracellular protein-protein interactions are essential for both intercellular communication and cohesion within multicellular organisms. Approximately a fifth of human genes encode membrane-tethered or secreted proteins, but they are largely absent from recent large-scale protein interaction datasets, making current interaction networks biased and incomplete. This discrepancy is due to the unsuitability of popular high-throughput methods to detect extracellular interactions because of the biochemical intractability of membrane proteins and their interactions. For example, cell surface proteins contain insoluble hydrophobic transmembrane regions, and their extracellular interactions are often highly transient, having half-lives of less than a second. To detect transient extracellular interactions on a large scale, we developed AVEXIS (avidity-based extracellular interaction screen), a high-throughput assay that overcomes these technical issues and can detect very transient interactions (half-lives

Authors: Bushell, K; Söllner, C; Schuster-Boeckler, B; Bateman, A; Wright, G

• Journal: Genome research
• Volume: 18
• Issue: 4
• Pages: 622-630
• Publication date: 2008-04-01
• DOI: 10.1101/gr.7187808
• EISSN: 1549-5469
• ISSN: 1088-9051
• Language: English
• Keywords: Gene Expression; Zebrafish Proteins; Immunoglobulins; Protein Interaction Mapping; Zebrafish; Protein Structure, Tertiary; Extracellular Space; Ligands; Kinetics; Membrane Proteins; Animals