Journal article

Analysis of Brownian Dynamics Simulations of Reversible Bimolecular Reactions

Abstract:: A class of Brownian dynamics algorithms for stochastic reaction-diffusion models which include reversible bimolecular reactions is presented and analyzed. The method is a generalization of the $\lambda$--$\newrho$ model for irreversible bimolecular reactions which was introduced in [arXiv:0903.1298]. The formulae relating the experimentally measurable quantities (reaction rate constants and diffusion constants) with the algorithm parameters are derived. The probability of geminate recombination is also investigated.

Publication status:: Published

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APA Style

Lipkova, J., Zygalakis, K., Chapman, S., & Erban, R. (2010). Analysis of Brownian Dynamics Simulations of Reversible Bimolecular Reactions. SIAM Journal of Applied Mathematics, 71(3), 714–730.

MLA Style

Lipkova, J., et al. “Analysis of Brownian Dynamics Simulations of Reversible Bimolecular Reactions.” SIAM Journal of Applied Mathematics, vol. 71, no. 3, 2010, pp. 714–30.

Chicago Style

Lipkova, J., K. Zygalakis, S. Chapman, and R. Erban. 2010. “Analysis of Brownian Dynamics Simulations of Reversible Bimolecular Reactions.” SIAM Journal of Applied Mathematics 71 (3): 714–30.
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Publisher copy:: 10.1137/100794213

Authors

+ Lipkova, J More by this author

Role:: Author

+ Zygalakis, K More by this author

Role:: Author

+ Chapman, S More by this author

Institution:: University of Oxford
Division:: MPLS
Department:: Mathematical Institute
Role:: Author

+ Erban, R More by this author

Institution:: University of Oxford
Division:: MPLS
Department:: Mathematical Institute
Role:: Author

Journal:: SIAM Journal of Applied Mathematics More from this journal
Volume:: 71
Issue:: 3
Pages:: 714-730
Publication date:: 2010-05-05
DOI:: 10.1137/100794213
EISSN:: 1095-712X
ISSN:: 0036-1399

Language:: English
Keywords:: physics.bio-ph

physics.chem-ph

q-bio.QM
Pubs id:: pubs:146856
UUID:: uuid:cf43b884-fadb-4975-b5b6-c0952ec2c616
Local pid:: pubs:146856
Source identifiers:: 146856
Deposit date:: 2012-12-19
ARK identifier:: ark:/29072/ora_cf43b884fadb4975b5b6c0952ec2c616

Terms of use

Copyright date:: 2010
Notes:: 16 pages, 13 figures, submitted to SIAM Appl Math

Licence:: Terms and Conditions of Use for Oxford University Research Archive

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