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An open dataset of Plasmodium falciparum genome variation in 7,000 worldwide samples

Abstract:

MalariaGEN is a data-sharing network that enables groups around the world to work together on the genomic epidemiology of malaria. Here we describe a new release of curated genome variation data on 7,000 Plasmodium falciparum samples from MalariaGEN partner studies in 28 malaria-endemic countries. High-quality genotype calls on 3 million single nucleotide polymorphisms (SNPs) and short indels were produced using a standardised analysis pipeline. Copy number variants associated with drug resis...

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Publication status:
Published
Peer review status:
Not peer reviewed

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Publisher copy:
10.1101/824730

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Institution:
University of Oxford
Division:
Medical Sciences Division
Department:
NDM
Sub department:
Big Data Institute
Role:
Author
ORCID:
0000-0002-7386-3566
More by this author
Institution:
University of Oxford
Division:
Medical Sciences Division
Department:
NDM
Sub department:
Big Data Institute
Role:
Author
Publisher:
Cold Spring Harbor Laboratory
Journal:
bioRxiv More from this journal
Publication date:
2019-11-07
DOI:
Keywords:
Pubs id:
pubs:1072504
UUID:
uuid:c7b9479f-8fd4-4bd9-9719-0610a3e03b32
Local pid:
pubs:1072504
Source identifiers:
1072504
Deposit date:
2019-12-04

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