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Polycomb-mediated transgenerational epigenetic inheritance of Drosophila eye colour is independent of small RNAs

Abstract:
Transgenerational epigenetic inheritance (TEI) describes the process whereby distinct epigenetic states are transmitted between generations, resulting in heritable gene expression and phenotypic differences that are independent of DNA sequence variation. Chromatin modifications have been demonstrated to be important in TEI; however, the extent to which they require other signals to establish and maintain epigenetic states is still unclear. Here we investigate whether small non-coding RNAs contribute to different epigenetic states of the Fab2L transgene in Drosophila triggered by transient long-range chromosomal contacts, which requires Polycomb complex activity to deposit the H3K27me3 modification for long-term TEI. By analysing mutants deficient in small non-coding RNAs, high-throughput sequencing data, long-range chromosomal contacts and gene expression, we demonstrate that small non-coding RNAs do not contribute directly to initiation or maintenance of silencing. However, we uncover an indirect role for microRNA expression in transgene silencing through effects on the Polycomb group gene Pleiohomeotic. Additionally, we show that a commonly used marker gene, Stubble (Sb), affects Pleiohomeotic expression, which may be important in interpreting experiments assaying Polycomb function in Drosophila development. By ruling out a plausible candidate for TEI at the Fab2L transgene, our work highlights the variability in different modes of TEI across species.
Publication status:
Published
Peer review status:
Peer reviewed

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Publisher copy:
10.1098/rsob.240298

Authors

More by this author
Institution:
University of Oxford
Division:
MPLS
Department:
Biology
Role:
Author
ORCID:
0000-0002-6084-5887
More by this author
Institution:
University of Oxford
Division:
MPLS
Department:
Biology
Role:
Author
More by this author
Institution:
University of Oxford
Division:
MPLS
Department:
Biology
Role:
Author
More by this author
Institution:
University of Oxford
Division:
MSD
Department:
Biochemistry
Role:
Author
ORCID:
0000-0003-0279-6199


Publisher:
Royal Society
Journal:
Open Biology More from this journal
Volume:
15
Issue:
3
Article number:
240298
Place of publication:
England
Publication date:
2025-03-12
Acceptance date:
2025-02-01
DOI:
EISSN:
2046-2441
Pmid:
40068813


Language:
English
Keywords:
Pubs id:
2094818
Local pid:
pubs:2094818
Deposit date:
2025-04-25
ARK identifier:

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