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Towards an understanding of the avian virome

Abstract:
The last two decades have seen the rise of viromics, the study of viral communities through the detection and characterization of virus genome sequences. Here we systematically review and summarize the scope and limitations of our current understanding of avian viromes, in both domesticated and wild-bird populations. We compare this viromic work to the broader literature on avian prokaryotic microbiomes, and highlight the growing importance of structured sampling and experimental design for testing explanatory hypotheses. We provide a number of recommendations for sample collection and preliminary data analysis to guide the development of avian viromics. Avian viromes have the potential to inform disease surveillance in poultry and improve our understanding of the risk of zoonotic viruses to human health.
Publication status:
Published
Peer review status:
Peer reviewed

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Publisher copy:
10.1099/jgv.0.001447

Authors


More by this author
Institution:
University of Oxford
Division:
MPLS
Department:
Zoology
Sub department:
Zoology
Role:
Author
ORCID:
0000-0002-1138-8800
More by this author
Institution:
University of Oxford
Division:
MPLS
Department:
Zoology
Sub department:
Zoology
Oxford college:
Linacre College
Role:
Author
ORCID:
0000-0002-8797-2667


Publisher:
Microbiology Society
Journal:
Journal of General Virology More from this journal
Volume:
101
Issue:
8
Pages:
785-790
Publication date:
2020-06-10
Acceptance date:
2020-05-21
DOI:
EISSN:
1465-2099
ISSN:
0022-1317
Pmid:
32519942


Language:
English
Keywords:
Pubs id:
1113686
Local pid:
pubs:1113686
Deposit date:
2020-07-06

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