Journal article
Evaluating 12 automated, whole-genome sequencing analysis pipelines for Mycobacterium tuberculosis complex: a comparative study
- Abstract:
-
Background
Reliance on complex, custom-built bioinformatics pipelines is a barrier to the implementation of whole-genome sequencing (WGS) of Mycobacterium tuberculosis in high-burden settings in some low-income and middle-income countries (LMICs). Automated analysis pipelines could address this inequity in access to WGS-based diagnostics and surveillance. This study aimed to systematically evaluate the performance and usability of publicly available WGS pipelines... Expand abstract
- Publication status:
- Published
- Peer review status:
- Peer reviewed
Actions
Access Document
- Files:
-
-
(Preview, Version of record, pdf, 328.2KB, Terms of use)
-
(Supplementary materials, zip, 2.6MB, Terms of use)
-
Authors
+ Wellcome Trust
More from this funder
- Funder identifier:
- https://ror.org/029chgv08
- Grant:
- 214560/Z/18/Z
- 214560/Z/18/Z
+ National Institute for Health and Care Research
More from this funder
- Funder identifier:
- https://ror.org/0187kwz08
- Grant:
- NIHR200915
- Publisher:
- Elsevier
- Journal:
- Lancet Microbe More from this journal
- Volume:
- 6
- Issue:
- 12
- Article number:
- 101210
- Publication date:
- 2025-10-21
- Acceptance date:
- 2025-07-17
- EISSN:
-
2666-5247
- Language:
-
English
- Pubs id:
-
2258684
- Local pid:
-
pubs:2258684
- Deposit date:
-
2025-07-31
- ARK identifier:
Terms of use
- Copyright holder:
- Spies et al.
- Copyright date:
- 2025
- Rights statement:
- © 2025 The Author(s). Published by Elsevier Ltd. This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
- Licence:
- CC Attribution (CC BY)
If you are the owner of this record, you can report an update to it here: Report update to this record