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Journal article

Antibody side chain conformations are position-dependent

Abstract:

Side chain prediction is an integral component of computational antibody design and structure prediction. Current antibody modelling tools use backbone-dependent rotamer libraries with conformations taken from general proteins. Here we present our antibody-specific rotamer library, where rotamers are binned according to their IMGT position, rather than their local backbone geometry. We find that for some amino acid types at certain positions, only a restricted number of side chain conformatio...

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Publication status:
Published
Peer review status:
Peer reviewed
Version:
Accepted manuscript

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Publisher copy:
10.1002/prot.25453

Authors


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Institution:
University of Oxford
Division:
MPLS Division
Department:
Statistics
Role:
Author
ORCID:
0000-0002-7817-3644
More by this author
Institution:
University of Oxford
Division:
MPLS Division
Department:
Statistics
Oxford college:
Kellogg College
Role:
Author
ORCID:
0000-0003-1388-2252
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Publisher:
Wiley Publisher's website
Journal:
Proteins Journal website
Volume:
86
Issue:
4
Pages:
383-392
Publication date:
2018-01-10
Acceptance date:
2018-01-05
DOI:
EISSN:
1097-0134
ISSN:
0887-3585
Pubs id:
pubs:817678
URN:
uri:8b768ec8-ce50-4b7f-8f1e-036c08777169
UUID:
uuid:8b768ec8-ce50-4b7f-8f1e-036c08777169
Local pid:
pubs:817678

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