Journal article
Multi-scale coarse-graining for the study of assembly pathways in DNA-brick self-assembly
- Abstract:
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Inspired by recent successes using single-stranded DNA tiles to produce complex structures, we develop a two-step coarse-graining approach that uses detailed thermodynamic calculations with oxDNA, a nucleotide-based model of DNA, to parametrize a coarser kinetic model that can reach the time and length scales needed to study the assembly mechanisms of these structures. We test the model by performing a detailed study of the assembly pathways for a two-dimensional target structure made up of 3...
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- Publication status:
- Published
- Peer review status:
- Peer reviewed
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(Version of record, pdf, 4.1MB)
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(Version of record, pdf, 3.7MB)
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- Publisher copy:
- 10.1063/1.5019344
Authors
Funding
+ Fundação para a Ciência e a Tecnologia
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Funding agency for:
Fonseca, P
Grant:
SFRH/BD/94405/2013
Bibliographic Details
- Publisher:
- AIP Publishing Publisher's website
- Journal:
- Journal of Chemical Physics Journal website
- Volume:
- 148
- Issue:
- 13
- Article number:
- 134910
- Publication date:
- 2018-04-05
- Acceptance date:
- 2018-02-28
- DOI:
- EISSN:
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1089-7690
- ISSN:
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0021-9606
Item Description
- Keywords:
- Pubs id:
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pubs:810291
- UUID:
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uuid:6eacc38d-58e4-437f-84bb-beb285c35488
- Local pid:
- pubs:810291
- Source identifiers:
-
810291
- Deposit date:
- 2018-04-05
Terms of use
- Copyright holder:
- Fonseca et al
- Copyright date:
- 2018
- Notes:
- Published by AIP Publishing. https://doi.org/10.1063/1.5019344
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