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An exact nonparametric method for inferring mosaic structure in sequence triplets.

Abstract:

Statistical tests for detecting mosaic structure or recombination among nucleotide sequences usually rely on identifying a pattern or a signal that would be unlikely to appear under clonal reproduction. Dozens of such tests have been described, but many are hampered by long running times, confounding of selection and recombination, and/or inability to isolate the mosaic-producing event. We introduce a test that is exact, nonparametric, rapidly computable, free of the infinite-sites assumption...

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Publication status:
Published

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Publisher copy:
10.1534/genetics.106.068874
Journal:
Genetics More from this journal
Volume:
176
Issue:
2
Pages:
1035-1047
Publication date:
2007-06-01
DOI:
EISSN:
1943-2631
ISSN:
0016-6731
Language:
English
Keywords:
Pubs id:
pubs:125408
UUID:
uuid:6b096647-d5b4-4e3f-944c-dbcda7cb44af
Local pid:
pubs:125408
Source identifiers:
125408
Deposit date:
2012-12-19

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