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PhyloTempo: A set of R scripts for assessing and visualizing temporal clustering in genealogies inferred from serially sampled viral sequences

Abstract:

Serially-sampled nucleotide sequences can be used to infer demographic history of evolving viral populations. The shape of a phylogenetic tree often reflects the interplay between evolutionary and ecological processes. Several approaches exist to analyze the topology and traits of a phylogenetic tree, by means of tree balance, branching patterns and comparative properties. The temporal clustering (TC) statistic is a new topological measure, based on ancestral character reconstruction, which c...

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Publisher copy:
10.4137/EBO.S9738

Authors


Norström, MM More by this author
Prosperi, MCF More by this author
Karlsson, AC More by this author
Publisher:
Libertas Academica Ltd.
Journal:
Evolutionary Bioinformatics
Volume:
2012
Issue:
8
Pages:
261-269
Publication date:
2012
DOI:
EISSN:
1176-9343
URN:
uuid:64364798-85ba-4c44-8e6a-d2b33174e417
Source identifiers:
344788
Local pid:
pubs:344788

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