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The Two Regime method for optimizing stochastic reaction-diffusion simulations

Abstract:

The computer simulation of stochastic reaction-diffusion processes in biology is often done using either compartment-based (spatially discretized) simulations or molecular-based (Brownian dynamics) approaches. Compartment-based approaches can yield quick and accurate mesoscopic results but lack the level of detail that is characteristic of the more computationally intensive molecular-based models. Often microscopic detail is only required in a small region but currently the best way to achiev...

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M. B. Flegg More by this author
S. J. Chapman More by this author
Publication date:
2011
URN:
uuid:43f5336f-5603-4c5d-b5c1-92144aa16171
Local pid:
oai:eprints.maths.ox.ac.uk:1388

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