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iSEE: Interactive SummarizedExperiment Explorer

Abstract:

Data exploration is critical to the comprehension of large biological data sets generated by high-throughput assays such as sequencing. However, most existing tools for interactive visualisation are limited to specific assays or analyses. Here, we present the iSEE (Interactive SummarizedExperiment Explorer) software package, which provides a general visual interface for exploring data in a SummarizedExperiment object. iSEE is directly compatible with many existing R/Bioconductor packages for ...

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Publication status:
Published
Peer review status:
Peer reviewed

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Publisher copy:
10.12688/f1000research.14966.1

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Institution:
University of Oxford
Division:
Medical Sciences Division
Department:
NDORMS
Sub department:
KIR
Department:
Oxford,MSD,NDORMS, KIR
Role:
Author
ORCID:
0000-0003-3899-3872
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Role:
Author
ORCID:
0000-0003-3252-7758
Publisher:
F1000Research Publisher's website
Journal:
F1000Research Journal website
Volume:
7
Article number:
741
Publication date:
2018-06-14
Acceptance date:
2018-06-14
DOI:
EISSN:
2046-1402
ISSN:
2046-1402
Pmid:
30002819
Source identifiers:
880144
Language:
English
Keywords:
Pubs id:
pubs:880144
UUID:
uuid:2d467547-0991-4c9f-98f0-e36123a19070
Local pid:
pubs:880144
Deposit date:
2018-11-07

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