Journal article
Introducing improved structural properties and salt dependence into a coarse-grained model of DNA.
- Abstract:
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We introduce an extended version of oxDNA, a coarse-grained model of deoxyribonucleic acid (DNA) designed to capture the thermodynamic, structural, and mechanical properties of single- and double-stranded DNA. By including explicit major and minor grooves and by slightly modifying the coaxial stacking and backbone-backbone interactions, we improve the ability of the model to treat large (kilobase-pair) structures, such as DNA origami, which are sensitive to these geometric features. Further, ...
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- Publication status:
- Published
- Peer review status:
- Peer reviewed
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- Files:
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(pdf, 5.3MB)
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- Publisher copy:
- 10.1063/1.4921957
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Authors
Funding
+ Swiss National Science Foundation
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Funding agency for:
Mosayebi, M
Grant:
PBEZP2-145981
Engineering and Physical Sciences Research Council
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Bibliographic Details
- Publisher:
- AIP Publishing Publisher's website
- Journal:
- Journal of chemical physics Journal website
- Volume:
- 142
- Issue:
- 23
- Pages:
- 234901
- Publication date:
- 2015-06-01
- DOI:
- EISSN:
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1089-7690
- ISSN:
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0021-9606
- Source identifiers:
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517512
Item Description
- Language:
- English
- Keywords:
- Pubs id:
-
pubs:517512
- UUID:
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uuid:241ae8d5-2092-4b24-b1d0-3fb7482b7bcd
- Local pid:
- pubs:517512
- Deposit date:
- 2015-07-06
Terms of use
- Copyright holder:
- AIP Publishing LLC
- Copyright date:
- 2015
- Notes:
- Copyright © 2015 AIP Publishing LLC.
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