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Coarse-graining DNA for simulations of DNA nanotechnology.

Abstract:

To simulate long time and length scale processes involving DNA it is necessary to use a coarse-grained description. Here we provide an overview of different approaches to such coarse-graining, focussing on those at the nucleotide level that allow the self-assembly processes associated with DNA nanotechnology to be studied. OxDNA, our recently-developed coarse-grained DNA model, is particularly suited to this task, and has opened up this field to systematic study by simulations. We illustrate ...

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Publication status:
Published
Peer review status:
Peer reviewed

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Publisher copy:
10.1039/c3cp53545b

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Institution:
University of Oxford
Division:
MPLS
Department:
Physics
Sub department:
Theoretical Physics
Role:
Author
More by this author
Institution:
University of Oxford
Division:
MPLS
Department:
Chemistry
Sub department:
Physical & Theoretical Chem
Role:
Author
More by this author
Institution:
University of Oxford
Division:
MPLS
Department:
Physics
Sub department:
Theoretical Physics
Role:
Author
More from this funder
Name:
National Science Foundation
Funding agency for:
Harrison, R
More from this funder
Name:
German Academic Exchange Service
More from this funder
Name:
Engineering and Physical Sciences Research Council
Publisher:
RSC Publishing
Journal:
Physical chemistry chemical physics : PCCP More from this journal
Volume:
15
Issue:
47
Pages:
20395-20414
Publication date:
2013-12-01
DOI:
EISSN:
1463-9084
ISSN:
1463-9076
Language:
English
Keywords:
Subjects:
Pubs id:
pubs:418298
UUID:
uuid:21cd4a42-e25c-4d79-aed3-5f88a8c58751
Local pid:
pubs:418298
Source identifiers:
418298
Deposit date:
2013-11-16

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