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Integrating long-range connectivity information into de Bruijn graphs

Abstract:

Motivation: The de Bruijn graph is a simple and efficient data structure that is used in many areas of sequence analysis including genome assembly, read error correction and variant calling. The data structure has a single parameter k, is straightforward to implement and is tractable for large genomes with ...

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Publication status:
Published
Peer review status:
Peer reviewed
Version:
Publisher's version

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Publisher copy:
10.1093/bioinformatics/bty157

Authors


More by this author
Institution:
University of Oxford
Division:
MSD Division
Department:
NDM; Human Genetics Wt Centre
More by this author
Institution:
University of Oxford
Division:
MSD Division
Department:
NDM; Human Genetics Wt Centre
More by this author
Institution:
University of Oxford
Division:
MSD Division
Department:
NDM; Human Genetics Wt Centre
More by this author
Institution:
University of Oxford
Division:
MSD Division
Department:
NDM; Human Genetics Wt Centre
More from this funder
Funding agency for:
Garimella, KV
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Grant:
090532/Z/09/Z
100956/Z/13/Z
Publisher:
Oxford University Press Publisher's website
Journal:
Bioinformatics Journal website
Volume:
34
Issue:
15
Pages:
2556–2565
Publication date:
2018-03-15
Acceptance date:
2018-03-12
DOI:
EISSN:
1460-2059
ISSN:
1367-4803
Pubs id:
pubs:829544
URN:
uri:c82af1fb-68ac-480c-8868-0ad1b6a4c81e
UUID:
uuid:c82af1fb-68ac-480c-8868-0ad1b6a4c81e
Local pid:
pubs:829544

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