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Assessment of phylogenetic sensitivity for reconstructing HIV-1 epidemiological relationships

Abstract:

Phylogenetic analysis has been extensively used as a tool for the reconstruction of epidemiological relations for research or for forensic purposes. It was our objective to assess the sensitivity of different phylogenetic methods and various phylogenetic programs to reconstruct epidemiological links among HIV-1 infected patients that is the probability to reveal a true transmission relationship. Multiple datasets (90) were prepared consisting of HIV-1 sequences in protease (PR) and partial re...

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Publication status:
Published
Peer review status:
Peer reviewed

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Institution:
University of Oxford
Division:
MPLS
Department:
Zoology
Role:
Author
More by this author
Institution:
University of Oxford
Division:
MPLS
Department:
Zoology
Role:
Author
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Publisher:
Elsevier Publisher's website
Journal:
Virus Research Journal website
Volume:
166
Issue:
1-2
Pages:
54-60
Publication date:
2012-03-12
Acceptance date:
2012-03-04
DOI:
ISSN:
1872-7492 and 0168-1702
Pmid:
22429620
Keywords:
Pubs id:
pubs:334430
UUID:
uuid:c4206862-0c99-400c-a2d0-da563a140066
Local pid:
pubs:334430
Deposit date:
2016-10-07

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