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Stochastic chemical kinetics and the total quasi-steady-state assumption: application to the stochastic simulation algorithm and chemical master equation.

Abstract:

Recently the application of the quasi-steady-state approximation (QSSA) to the stochastic simulation algorithm (SSA) was suggested for the purpose of speeding up stochastic simulations of chemical systems that involve both relatively fast and slow chemical reactions [Rao and Arkin, J. Chem. Phys. 118, 4999 (2003)] and further work has led to the nested and slow-scale SSA. Improved numerical efficiency is obtained by respecting the vastly different time scales characterizing the system and the...

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Publication status:
Published

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Publisher copy:
10.1063/1.2971036

Authors


Macnamara, S More by this author
Bersani, AM More by this author
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Institution:
University of Oxford
Department:
Oxford, MPLS, Computer Science
Journal:
The Journal of chemical physics
Volume:
129
Issue:
9
Pages:
095105
Publication date:
2008-09-05
DOI:
EISSN:
1089-7690
ISSN:
0021-9606
URN:
uuid:beb781c5-136c-44ed-af01-b16b71f46984
Source identifiers:
292331
Local pid:
pubs:292331

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