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Stochastic modelling of reaction-diffusion processes: algorithms for bimolecular reactions

Abstract:

Several stochastic simulation algorithms (SSAs) have been recently proposed for modelling reaction-diffusion processes in cellular and molecular biology. In this paper, two commonly used SSAs are studied. The first SSA is an on-lattice model described by the reaction-diffusion master equation. The second SSA is an off-lattice model based on the simulation of Brownian motion of individual molecules and their reactive collisions. In both cases, it is shown that the commonly used implementation ...

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S. J. Chapman More by this author
Publication date:
2009
URN:
uuid:b7bc0ed5-d541-4106-9e5c-a1856d9215bd
Local pid:
oai:eprints.maths.ox.ac.uk:835

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