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Simulated bacterial genomes for evaluating SNP calling pipelines

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Department:
NDM Experimental Medicine
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Grant:
HPRU-2012-10041
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Project
Publisher:
University of Oxford
Publication date:
2019
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Format:
Digital
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This archive is provided as an online supplementary dataset for the Bush, et al. manuscript "Genomic diversity affects the accuracy of bacterial SNP calling pipelines". It contains a set of 254 SNP-containing genomes, VCFs containing nucmer and Parsnp strain-to-representative genome SNP calls, and the final truth sets of SNPs used for evaluation.

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