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Simulated bacterial genomes for evaluating SNP calling pipelines

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Institution:
University of Oxford
Division:
MSD
Department:
NDM
Sub department:
NDM Experimental Medicine
Role:
Creator
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Grant:
HPRU-2012-10041
Publisher:
University of Oxford
Publication date:
2019
DOI:
Documentation:
This archive is provided as an online supplementary dataset for the Bush, et al. manuscript "Genomic diversity affects the accuracy of bacterial SNP calling pipelines". It contains a set of 254 SNP-containing genomes, VCFs containing nucmer and Parsnp strain-to-representative genome SNP calls, and the final truth sets of SNPs used for evaluation.
UUID:
uuid:b795f881-0501-4470-b6ec-1d08c0d2317f
Deposit date:
2019-05-16

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