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Inference of bacterial microevolution using multilocus sequence data.

Abstract:

We describe a model-based method for using multilocus sequence data to infer the clonal relationships of bacteria and the chromosomal position of homologous recombination events that disrupt a clonal pattern of inheritance. The key assumption of our model is that recombination events introduce a constant rate of substitutions to a contiguous region of sequence. The method is applicable both to multilocus sequence typing (MLST) data from a few loci and to alignments of multiple bacterial genom...

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Publication status:
Published

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Publisher copy:
10.1534/genetics.106.063305

Authors


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Institution:
University of Oxford
Division:
MPLS
Department:
Statistics
Role:
Author
Journal:
Genetics
Volume:
175
Issue:
3
Pages:
1251-1266
Publication date:
2007-03-01
DOI:
EISSN:
1943-2631
ISSN:
0016-6731
Source identifiers:
97718
Language:
English
Keywords:
Pubs id:
pubs:97718
UUID:
uuid:a879f87e-45f3-42bd-9013-b262c8c273db
Local pid:
pubs:97718
Deposit date:
2012-12-19

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