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Transcriptome Profiling in Rat Inbred Strains and Experimental Cross Reveals Discrepant Genetic Architecture of Genome-Wide Gene Expression.

Abstract:

To test the impact of genetic heterogeneity on cis- and trans-mediated mechanisms of gene expression regulation, we profiled the transcriptome of adipose tissue in 20 inbred congenic strains derived from diabetic Goto-Kakizaki (GK) rats and Brown-Norway (BN) controls, which contain well-defined blocks (1Mb-183Mb) of genetic polymorphisms, and in 123 genetically heterogeneous rats of an (GKxBN)F2 offspring. Within each congenic we identified 73 to 1,351 differentially expressed genes (DEG), on...

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Publication status:
Published
Peer review status:
Peer reviewed

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Publisher copy:
10.1534/g3.116.033274

Authors


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Institution:
University of Oxford
Division:
MSD
Department:
NDM
Sub department:
Human Genetics Wt Centre
Role:
Author
More by this author
Institution:
University of Oxford
Division:
MSD
Department:
NDM
Sub department:
Human Genetics Wt Centre
Role:
Author
More by this author
Institution:
University of Oxford
Division:
MSD
Department:
NDM
Sub department:
Human Genetics Wt Centre
Role:
Author
More by this author
Institution:
University of Oxford
Division:
MSD
Department:
NDM
Sub department:
Human Genetics Wt Centre
Role:
Author
More by this author
Institution:
University of Oxford
Division:
MSD
Department:
NDM
Sub department:
Human Genetics Wt Centre
Role:
Author
More from this funder
Grant:
Senior Fellowship in Basic Biomedical Science (057733)
Core Award grant (075491/Z/04
090532/Z/09/Z
083573/Z/07/Z
More from this funder
Grant:
HEALTH-F4-2010-241504
LSHG-CT-2006-037683
Publisher:
Genetics Society of America
Journal:
G3 More from this journal
Volume:
6
Issue:
11
Pages:
3671-3683
Publication date:
2016-09-19
Acceptance date:
2016-09-14
DOI:
EISSN:
2160-1836
ISSN:
2160-1836
Language:
English
Keywords:
Pubs id:
pubs:645840
UUID:
uuid:983586df-4949-454b-99fa-8b98ba658b7d
Local pid:
pubs:645840
Source identifiers:
645840
Deposit date:
2016-11-09

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