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SimMLST: simulation of multi-locus sequence typing data under a neutral model.

Abstract:

SUMMARY: Multi-locus sequence typing (MLST) is a widely used method of characterization of bacterial isolates. It has been applied to over 50,000 isolates in over 50 different species. Here, we present a coalescent method to jointly simulate MLST data and the clonal genealogy that gave rise to the sample. AVAILABILITY AND IMPLEMENTATION: SimMLST was implemented in C++ and Qt4 for the graphical user interface. It is distributed under the terms of the GNU General Public License. Source code an...

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Publication status:
Published

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Institution:
University of Oxford
Division:
MPLS
Department:
Statistics
Role:
Author
Journal:
Bioinformatics (Oxford, England) More from this journal
Volume:
25
Issue:
11
Pages:
1442-1444
Publication date:
2009-06-01
DOI:
EISSN:
1367-4811
ISSN:
1367-4803
Language:
English
Keywords:
Pubs id:
pubs:97733
UUID:
uuid:8cafeb15-414c-474e-b326-2cefc35cf66d
Local pid:
pubs:97733
Source identifiers:
97733
Deposit date:
2012-12-19

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