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Journal article

CODA: a combined algorithm for predicting the structurally variable regions of protein models.

Abstract:

CODA, an algorithm for predicting the variable regions in proteins, combines FREAD a knowledge based approach, and PETRA, which constructs the region ab initio. FREAD selects from a database of protein structure fragments with environmentally constrained substitution tables and other rule-based filters. FREAD was parameterized and tested on over 3000 loops. The average root mean square deviation ranged from 0.78 A for three residue loops to 3.5 A for eight residue loops on a nonhomologous tes...

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Publication status:
Published

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Publisher copy:
10.1110/ps.37601

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Journal:
Protein science : a publication of the Protein Society
Volume:
10
Issue:
3
Pages:
599-612
Publication date:
2001-03-05
DOI:
EISSN:
1469-896X
ISSN:
0961-8368
URN:
uuid:7a935729-dce4-4362-b768-e8bd8c5a5d2e
Source identifiers:
110905
Local pid:
pubs:110905

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