- Abstract:
-
We present a fast ab initio method for the prediction of local conformations in proteins. The program, PETRA, selects polypeptide fragments from a computer-generated database (APD) encoding all possible peptide fragments up to twelve amino acids long. Each fragment is defined by a representative set of eight straight phi/psi pairs, obtained iteratively from a trial set by calculating how fragments generated from them represent the protein databank (PDB). Ninety-six percent (96%) of length fiv...
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- Journal:
- Proteins
- Volume:
- 40
- Issue:
- 1
- Pages:
- 135-144
- Publication date:
- 2000-07-05
- DOI:
- EISSN:
-
1097-0134
- ISSN:
-
0887-3585
- URN:
-
uuid:7089e31a-b133-4bee-9e87-072b908010a0
- Source identifiers:
-
110903
- Local pid:
- pubs:110903
- Language:
- English
- Keywords:
- Copyright date:
- 2000
Journal article
A novel exhaustive search algorithm for predicting the conformation of polypeptide segments in proteins.
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