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HAPGEN2: simulation of multiple disease SNPs.

Abstract:

MOTIVATION: Performing experiments with simulated data is an inexpensive approach to evaluating competing experimental designs and analysis methods in genome-wide association studies. Simulation based on resampling known haplotypes is fast and efficient and can produce samples with patterns of linkage disequilibrium (LD), which mimic those in real data. However, the inability of current methods to simulate multiple nearby disease SNPs on the same chromosome can limit their application. RESULT...

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Publication status:
Published

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Institution:
University of Oxford
Department:
Oxford, MPLS, Statistics, Clinical Medicine
Role:
Author
Journal:
Bioinformatics (Oxford, England)
Volume:
27
Issue:
16
Pages:
2304-2305
Publication date:
2011-08-05
DOI:
EISSN:
1367-4811
ISSN:
1367-4803
URN:
uuid:6e96baa8-66a6-4011-9842-68ccc9ae08c3
Source identifiers:
151216
Local pid:
pubs:151216

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