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Combination of novel and public RNA-seq datasets to generate an mRNA expression atlas for the domestic chicken

Abstract:
Background The domestic chicken (Gallus gallus) is widely used as a model in developmental biology and is also an important livestock species. We describe a novel approach to data integration to generate an mRNA expression atlas for the chicken spanning major tissue types and developmental stages, using a diverse range of publicly-archived RNA-seq datasets and new data derived from immune cells and tissues. Results Randomly down-sampling RNA-seq datasets to ... Expand abstract
Publication status:
Published
Peer review status:
Peer reviewed
Version:
Publisher's Version

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Publisher copy:
10.1186/s12864-018-4972-7

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Institution:
University of Oxford
Division:
Medical Sciences Division
Department:
NDM
Subgroup:
NDM Experimental Medicine
Role:
Author
ORCID:
0000-0001-9341-2562
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Rural and Environmental Science and Analytical Sciences Division of the Scottish Government More from this funder
Publisher:
BMC Publisher's website
Journal:
BMC Genomics Journal website
Volume:
594
Issue:
19
Publication date:
2018-08-07
Acceptance date:
2018-07-31
DOI:
EISSN:
1471-2164
Pubs id:
pubs:897030
URN:
uri:6b99984e-7e8c-4aeb-9eb0-d46e2c0ccead
UUID:
uuid:6b99984e-7e8c-4aeb-9eb0-d46e2c0ccead
Local pid:
pubs:897030

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