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STEAK: A specific tool for transposable elements and retrovirus detection in high-throughput sequencing data

Abstract:

The advancements of high-throughput genomics have unveiled much about the human genome highlighting the importance of variations between individuals and their contribution to disease. Even though numerous software have been developed to make sense of large genomics datasets, a major short falling of these has been the inability to cope with repetitive regions, specifically to validate structural variants and accordingly assess their role in disease. Here we describe our program STEAK, a massi...

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Publication status:
Published
Peer review status:
Peer reviewed
Version:
Publisher's version

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Publisher copy:
10.1093/ve/vex023

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Institution:
University of Oxford
Division:
MPLS Division
Department:
Zoology
Role:
Author
More by this author
Institution:
University of Oxford
Division:
Medical Sciences Division
Department:
NDM Experimental Medicine
Role:
Author
More by this author
Institution:
University of Oxford
Division:
MPLS Division
Department:
Zoology
Role:
Author
More by this author
Institution:
University of Oxford
Division:
MPLS Division
Department:
Zoology
Oxford college:
St Hildas College
Role:
Author
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More from this funder
Funding agency for:
Katzourakis, A
Publisher:
Oxford University Press Publisher's website
Journal:
Virus Evolution Journal website
Volume:
3
Issue:
2
Pages:
vex023
Publication date:
2017-08-21
DOI:
ISSN:
2057-1577
Pubs id:
pubs:732825
URN:
uri:6615c3c8-3b2d-4150-be8c-39009d727506
UUID:
uuid:6615c3c8-3b2d-4150-be8c-39009d727506
Local pid:
pubs:732825
Paper number:
2

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