Journal article
GAT: a simulation framework for testing the association of genomic intervals.
- Abstract:
-
A common question in genomic analysis is whether two sets of genomic intervals overlap significantly. This question arises, for example, when interpreting ChIP-Seq or RNA-Seq data in functional terms. Because genome organization is complex, answering this question is non-trivial.We present Genomic Association Test (GAT), a tool for estimating the significance of overlap between multiple sets of genomic intervals. GAT implements a null model that the two sets of intervals are placed independen...
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- Publication status:
- Published
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- Publisher copy:
- 10.1093/bioinformatics/btt343
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Authors
Bibliographic Details
- Journal:
- Bioinformatics (Oxford, England)
- Volume:
- 29
- Issue:
- 16
- Pages:
- 2046-2048
- Publication date:
- 2013-08-01
- DOI:
- EISSN:
-
1367-4811
- ISSN:
-
1367-4803
- Source identifiers:
-
407564
Item Description
- Language:
- English
- Keywords:
- Pubs id:
-
pubs:407564
- UUID:
-
uuid:64d36f85-2f0a-414c-bab9-ce1b2beb4230
- Local pid:
- pubs:407564
- Deposit date:
- 2013-11-16
Terms of use
- Copyright date:
- 2013
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