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Unbiased whole-genome deep sequencing of human and porcine stool samples reveals circulation of multiple groups of rotaviruses and a putative zoonotic infection

Abstract:

Coordinated and synchronous surveillance for zoonotic viruses in both human clinical cases and animal reservoirs provides an opportunity to identify interspecies virus movement. Rotavirus (RV) is an important cause of viral gastroenteritis in humans and animals. In this study, we document the RV diversity within co-located humans and animals sampled from the Mekong delta region of Vietnam using a primer-independent, agnostic, deep sequencing approach. A total of 296 stool samples (146 from di...

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Publication status:
Published
Peer review status:
Peer reviewed
Version:
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Publisher copy:
10.1093/ve/vew027

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Institution:
University of Oxford
Department:
Oxford, MSD, NDM, Tropical Medicine, Vietnam/OUCRU
More by this author
Institution:
University of Oxford
Department:
Oxford, MSD, NDM, Tropical Medicine, Vietnam/OUCRU
Munnink, BBO More by this author
van der Hoek, L More by this author
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Publisher:
Oxford University Press Publisher's website
Journal:
Virus Evolution Journal website
Volume:
2
Issue:
2
Pages:
vew027
Publication date:
2016-10-03
Acceptance date:
2016-09-05
DOI:
EISSN:
2057-1577
Pubs id:
pubs:710682
URN:
uri:55e7d4b6-258b-41d5-b6ff-928ac8bebdf0
UUID:
uuid:55e7d4b6-258b-41d5-b6ff-928ac8bebdf0
Local pid:
pubs:710682

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