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PANINI: Pangenome Neighbour Identification for bacterial populations

Abstract:

The standard workhorse for genomic analysis of the evolution of bacterial populations is phylogenetic modelling of mutations in the core genome. However, a notable amount of information about evolutionary and transmission processes in diverse populations can be lost unless the accessory genome is also taken into consideration. Here, we introduce panini (Pangenome Neighbour Identification for Bacterial Populations), a computationally scalable method for identifying the neighbours for each isol...

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Publication status:
Published
Peer review status:
Peer reviewed
Version:
Publisher's version

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Publisher copy:
10.1099/mgen.0.000220

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COIN Centre of Excellence More from this funder
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Publisher:
Microbiology Society Publisher's website
Journal:
Microbial Genomics Journal website
Volume:
2018
Pages:
4
Publication date:
2018-11-22
Acceptance date:
2018-08-26
DOI:
EISSN:
2057-5858
ISSN:
2057-5858
Pubs id:
pubs:949684
URN:
uri:52dcab4a-0a60-4894-95bb-e68b2b5257a0
UUID:
uuid:52dcab4a-0a60-4894-95bb-e68b2b5257a0
Local pid:
pubs:949684

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