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htsget: a protocol for securely streaming genomic data

Abstract:
Standardized interfaces for efficiently accessing high-throughput sequencing data are a fundamental requirement for large-scale genomic data sharing. We have developed htsget, a protocol for secure, efficient and reliable access to sequencing read and variation data. We demonstrate four independent client and server implementations, and the results of a comprehensive interoperability demonstration.
Publication status:
Published
Peer review status:
Peer reviewed
Version:
Publisher's Version

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Publisher copy:
10.1093/bioinformatics/bty492

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Institution:
University of Oxford
Division:
Medical Sciences Division
Department:
Big Data Institute
Role:
Author
ORCID:
0000-0002-7894-5253
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Role:
Author
ORCID:
0000-0001-8314-8497
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Publisher:
Oxford University Press Publisher's website
Journal:
Bioinformatics Journal website
Volume:
35
Issue:
1
Pages:
119–121
Chapter number:
bty492
Publication date:
2018-06-19
Acceptance date:
2018-06-14
DOI:
EISSN:
1367-4811
ISSN:
1367-4803
Pubs id:
pubs:859842
URN:
uri:40dd93cd-f710-4de6-9560-3068956d1c86
UUID:
uuid:40dd93cd-f710-4de6-9560-3068956d1c86
Local pid:
pubs:859842
Language:
English
Keywords:

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