- Standardized interfaces for efficiently accessing high-throughput sequencing data are a fundamental requirement for large-scale genomic data sharing. We have developed htsget, a protocol for secure, efficient and reliable access to sequencing read and variation data. We demonstrate four independent client and server implementations, and the results of a comprehensive interoperability demonstration.
- Publication status:
- Peer review status:
- Peer reviewed
- Publisher's Version
- Oxford University Press Publisher's website
- Bioinformatics Journal website
- Chapter number:
- Publication date:
- Acceptance date:
- Pubs id:
- Local pid:
- Copyright holder:
- Kelleher et al.
- Copyright date:
© The Author(s) 2018. Published by Oxford University Press.
This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
htsget: a protocol for securely streaming genomic data
Views and Downloads
If you are the owner of this record, you can report an update to it here: Report update to this record