Journal article icon

Journal article

htsget: a protocol for securely streaming genomic data

Abstract:
Standardized interfaces for efficiently accessing high-throughput sequencing data are a fundamental requirement for large-scale genomic data sharing. We have developed htsget, a protocol for secure, efficient and reliable access to sequencing read and variation data. We demonstrate four independent client and server implementations, and the results of a comprehensive interoperability demonstration.
Publication status:
Published
Peer review status:
Peer reviewed

Actions


Access Document


Files:
Publisher copy:
10.1093/bioinformatics/bty492

Authors


More by this author
Institution:
University of Oxford
Division:
MSD
Department:
NDM
Sub department:
Human Genetics Wt Centre
Role:
Author
ORCID:
0000-0002-7894-5253
More by this author
Role:
Author
ORCID:
0000-0001-8314-8497
Expand authors...
Publisher:
Oxford University Press Publisher's website
Journal:
Bioinformatics Journal website
Volume:
35
Issue:
1
Pages:
119–121
Publication date:
2018-06-19
Acceptance date:
2018-06-14
DOI:
EISSN:
1367-4811
ISSN:
1367-4803
Pmid:
29931085
Source identifiers:
859842
Language:
English
Keywords:
Pubs id:
pubs:859842
UUID:
uuid:40dd93cd-f710-4de6-9560-3068956d1c86
Local pid:
pubs:859842
Deposit date:
2018-08-15

Terms of use


Views and Downloads






If you are the owner of this record, you can report an update to it here: Report update to this record

TO TOP