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Exploiting bacterial whole-genome sequencing data for the evaluation of diagnostic assays: Campylobacter species identification as a case study.

Abstract:

The application of whole-genome sequencing (WGS) to problems in clinical microbiology has had a major impact on the field. Clinical laboratories are now using WGS for pathogen identification, antimicrobial susceptibility testing, and epidemiological typing. WGS data also represents a valuable resource for the development and evaluation of molecular diagnostic assays, which continue to play an important role in clinical microbiology. To demonstrate this application of WGS, the current study us...

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Publication status:
Published
Peer review status:
Peer reviewed
Version:
Publisher's version

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Publisher copy:
10.1128/JCM.01522-16

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Department:
Oxford, MPLS, Zoology
Role:
Author
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Department:
Oxford, MPLS, Zoology
Role:
Author
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Department:
Oxford, MPLS, Zoology
Role:
Author
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Funding agency for:
Jansen van Rensburg, MJ
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Funding agency for:
Jansen van Rensburg, MJ
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Funding agency for:
Jansen van Rensburg, MJ
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Funding agency for:
Maiden, M
Publisher:
American Society for Microbiology Publisher's website
Journal:
Journal of Clinical Microbiology Journal website
Volume:
54
Issue:
12
Pages:
2882-2890
Publication date:
2016-10-12
Acceptance date:
2016-01-01
DOI:
EISSN:
1098-660X
ISSN:
0095-1137
Pubs id:
pubs:653411
URN:
uri:343f858a-06d3-44ff-8a57-3ab281fd1e14
UUID:
uuid:343f858a-06d3-44ff-8a57-3ab281fd1e14
Local pid:
pubs:653411
Paper number:
12
Language:
English
Keywords:

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