Simulation and verification for computational modelling of signalling pathways.
Modelling of the dynamics of biochemical reaction networks typically proceeds by solving ordinary differential equations or stochastic simulation via the Gillespie algorithm. More recently, computational methods such as process algebra techniques have been successfully applied to the analysis of signalling pathways. One advantage of these is that they enable automatic verification of the models, via model checking, against qualitative and quantitative temporal logic specifications, for exampl...Expand abstract
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