Journal article
Transformation diffusion reconstruction of three-dimensional histology volumes from two-dimensional image stacks
- Abstract:
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Traditional histology is the gold standard for tissue studies, but it is intrinsically reliant on two-dimensional (2D) images. Study of volumetric tissue samples such as whole hearts produces a stack of misaligned and distorted 2D images that need to be reconstructed to recover a congruent volume with the original sample's shape. In this paper, we develop a mathematical framework called Transformation Diffusion (TD) for stack alignment refinement as a solution to the heat diffusion equation. ...
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- Publication status:
- Published
- Peer review status:
- Peer reviewed
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- Files:
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(pdf, 4.0MB)
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- Publisher copy:
- 10.1016/j.media.2017.03.004
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Authors
Funding
+ European Commission
More from this funder
Funding agency for:
Casero, R
Grant:
preDiCT-EC FP7, 2008-2011
+ British Heart Foundation
More from this funder
Funding agency for:
Schneider, J
Grant:
FS/11/50/29038
Bibliographic Details
- Publisher:
- Elsevier Publisher's website
- Journal:
- Medical Image Analysis Journal website
- Volume:
- 38
- Pages:
- 184–204
- Publication date:
- 2017-03-01
- Acceptance date:
- 2017-03-21
- DOI:
- EISSN:
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1361-8423
- ISSN:
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1361-8415,
Item Description
- Keywords:
- Pubs id:
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pubs:687086
- UUID:
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uuid:2215578e-fb20-4f26-8ce3-2a36200921ed
- Local pid:
- pubs:687086
- Deposit date:
- 2017-03-25
Terms of use
- Copyright holder:
- Casero et al
- Copyright date:
- 2017
- Notes:
- © 2017 The Authors. Published by Elsevier B.V. This is an open access article under the CC BY license. (http://creativecommons.org/licenses/by/4.0/). The datasets associated with this article can be found at https://ora.ox.ac.uk/objects/uuid:75f09b9e-e7d5-4b48-9519-619177cea1ef (original histology and blockface) and https://ora.ox.ac.uk/objects/uuid:716fe2ef-f965-40ff-8da4-8a5ad48f4aea (reconstructed histology)
- Licence:
- CC Attribution (CC BY)
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