- Abstract:
-
Traditional histology is the gold standard for tissue studies, but it is intrinsically reliant on two-dimensional (2D) images. Study of volumetric tissue samples such as whole hearts produces a stack of misaligned and distorted 2D images that need to be reconstructed to recover a congruent volume with the original sample's shape. In this paper, we develop a mathematical framework called Transformation Diffusion (TD) for stack alignment refinement as a solution to the heat diffusion equation. ...
Expand abstract - Publication status:
- Published
- Peer review status:
- Peer reviewed
- Version:
- Publisher's version
- Files:
-
-
(pdf, 4.0MB)
-
- Publisher copy:
- 10.1016/j.media.2017.03.004
-
Version unsuitable
-
We have not obtained a suitable full-text for a given research output. See this page for more information.
-
Recently completed
-
Sometimes content is held in ORA but is unavailable for a fixed period of time to comply with the policies and wishes of rights holders.
-
Permissions
-
All content made available in ORA should comply with relevant rights, such as copyright. See this page for more information.
-
Clearance
-
Some thesis volumes scanned as part of the digitisation scheme funded by Dr Leonard Polonsky are currently unavailable due to sensitive material or uncleared third-party copyright content. We are attempting to contact authors whose theses are affected.
- Publisher:
- Elsevier Publisher's website
- Journal:
- Medical Image Analysis Journal website
- Volume:
- 38
- Pages:
- 184–204
- Publication date:
- 2017-03-05
- Acceptance date:
- 2017-03-21
- DOI:
- EISSN:
-
1361-8423
- ISSN:
-
1361-8415,
- Pubs id:
-
pubs:687086
- URN:
-
uri:2215578e-fb20-4f26-8ce3-2a36200921ed
- UUID:
-
uuid:2215578e-fb20-4f26-8ce3-2a36200921ed
- Local pid:
- pubs:687086
- Copyright holder:
- Casero et al
- Copyright date:
- 2017
- Notes:
- © 2017 The Authors. Published by Elsevier B.V. This is an open access article under the CC BY license. (http://creativecommons.org/licenses/by/4.0/). The datasets associated with this article can be found at https://ora.ox.ac.uk/objects/uuid:75f09b9e-e7d5-4b48-9519-619177cea1ef (original histology and blockface) and https://ora.ox.ac.uk/objects/uuid:716fe2ef-f965-40ff-8da4-8a5ad48f4aea (reconstructed histology)
Journal article
Transformation diffusion reconstruction of three-dimensional histology volumes from two-dimensional image stacks
Actions
Access Document
Why is the content I wish to access not available via ORA?
Bibliographic data (the information relating to research outputs) and full-text items (e.g. articles, theses, reports, etc.) arrive in ORA from several different sources. Unfortunately we are not able to make available the full-text for every research output.
Please contact the ORA team (
) if you have queries regarding unavailable content OR if you are aware of a full-text copy we can make available.
) if you have queries regarding unavailable content OR if you are aware of a full-text copy we can make available.
Content may be unavailable for the following four reasons
Alternative access to the full-text
You may be able to access the full-text directly from the publisher's website using the 'Publisher Copy' link in the 'Links & Downloads' box from a research output's ORA record page. This method may require an institutional or individual subscription to the journal/resource.
Authors
Funding
Bibliographic Details
Item Description
Terms of use
If you are the owner of this record, you can report an update to it here: Report update to this record