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Exploiting bacterial whole-genome sequencing data for evaluation of diagnostic assays: Campylobacter species identification as a case study

Abstract:

The application of whole-genome sequencing (WGS) to problems in clinical microbiology has had a major impact on the field. Clinical laboratories are now using WGS for pathogen identification, antimicrobial susceptibility testing, and epidemiological typing. WGS data also represent a valuable resource for the development and evaluation of molecular diagnostic assays, which continue to play an important role in clinical microbiology. To demonstrate this application of WGS, this study used publi...

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Publication status:
Published
Peer review status:
Peer reviewed
Version:
Publisher's version

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Publisher copy:
10.1128/JCM.01797-16

Authors


More by this author
Institution:
University of Oxford
Division:
MPLS Division
Department:
Zoology
Role:
Author
More by this author
Institution:
University of Oxford
Division:
MPLS Division
Department:
Zoology
Role:
Author
More by this author
Institution:
University of Oxford
Division:
MPLS Division
Department:
Zoology
Oxford college:
Hertford College
Role:
Author
Merton College Oxford More from this funder
Clarendon Fund More from this funder
Funds for Women Graduates More from this funder
National Institute for Health Research More from this funder
Publisher:
Association for Computing Machinery Publisher's website
Journal:
Journal of Clinical Microbiology Journal website
Volume:
54
Issue:
12
Pages:
2882-2890
Publication date:
2016-10-05
Acceptance date:
2016-10-03
DOI:
EISSN:
1098-660X
ISSN:
0095-1137
Pubs id:
pubs:664623
URN:
uri:032c84cd-17c6-4ba5-ae1e-545c1b9f1808
UUID:
uuid:032c84cd-17c6-4ba5-ae1e-545c1b9f1808
Local pid:
pubs:664623
Keywords:

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